RNA-seq analysis

AccuraScience is a bioinformatics and computational biology service company founded in June 2013, described as the first bioinformatics service company in the U.S. to offer broad-spectrum, fully customized analysis for academic and industry researchers. It has completed more than 400 projects for over 180 institutions worldwide, and its team brings over 200 years of combined experience in bioinformatics, computational biology, and the life sciences.

16S and shotgun metagenomicsAlphaFold structural modelingATAC-seq/ChIP-seq/CUT&Tag/CUT&RUN analysisbioinformatics analysiscomputational biologyDNA methylation analysisGWAS/EWAS/TWAS/PWASHi-C and 3D genome analysisLC-MS, GC-MS, NMR data analysismachine learning and deep learning modelingmulti-omics integrationNIH NAM grant support and modelingproteomics pipelines (DIA/TMT)single-cell and spatial transcriptomicsvariant callingwhole-genome/exome analysis

BreakSight® Inc. spun out of research in Dr. Eric Brown's laboratory at the University of Pennsylvania, where Nishita Shastri developed the BrITL technique to tag and retrieve DNA double-strand break ends from the genome. The company provides commercial assays and services for genome-wide DNA break mapping, bioinformatics analysis, and precision medicine research, aiming to expand coverage to the non-coding 98% of the genome.

bioinformatics analysisDNA double-strand break mappinglibrary preparationnext-generation sequencingpeak callingquality control

Genesys Life Inc. provides professional bioinformatics analysis of sequencing data, turning raw data from any major sequencing provider into publication-ready results, figures, and reports. Services include CRISPR and targeted amplicon analysis, RNA-seq and gene expression analysis, microbiome and virome analysis, genome/panel variant analysis, and custom bioinformatics consulting, typically delivered in 2-3 business days. The site also offers free FASTQ quality analysis tools.

alignment and quantificationCRISPR indel analysiscustom pipeline developmentdata visualization and figure generationdifferential expression testingFASTQ quality control analysismicrobiome/16S community profilingpathway enrichmentshotgun metagenomicstaxonomic profilingvariant calling and annotationvirome characterization